Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs75541583 chr1:26694059 G/C 6.1E-5 360 22.37 24.5 17.15 KM Plot
CRC rs7555966 chr1:11664772 G/A 3.3E-6 367 9.37 18.82 24.5 KM Plot
CRC rs75728990 chr6:53528375 C/T 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs761081 chr1:11664197 T/C 3.35E-6 364 9.37 19.1 24.5 KM Plot
CRC rs761082 chr1:11664013 C/A 2.52E-5 361 10.07 20.4 24.7 KM Plot
CRC rs76135039 chr6:53529138 C/T 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs76354454 chr22:50206573 G/A 1.53E-8 372 22.25 25.28 7.9 KM Plot
CRC rs76518692 chr7:62059897 C/G 5.76E-7 365 23.83 20.3 11.27 KM Plot
CRC rs76994901 chr6:53528523 T/C 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs7700955 chr5:54668531 T/C 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs7705875 chr5:54596391 C/T 5.47E-5 372 22.3 24.35 9.67 KM Plot
CRC rs7715368 chr5:54653708 T/C 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs77164467 chr6:53529687 G/C 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs7721304 chr5:54590269 A/G 4.95E-5 371 22.32 23.43 9.67 KM Plot
CRC rs77261700 chr15:76785649 T/A 1.55E-6 371 22.53 22.32 7.6 KM Plot